[SOLVED] Problem in installing STlib

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  • 23 April 2020 at 08:46 #15914
    Amir
    Blocked

    Hello
    I tried to add Softrobot Plugin as you explained in the before comments:
    1-download Softrobot Plugin from git clone https://github.com/SofaDefrost/SoftRobots
    2-make a separate folder “plugin” outside src and put the downloaded file there
    3-add the path of separate plugin folder to SOFA EXTERNAL DIRECTORIES
    4-and configure Cmake GUI
    But after configuration I found this warning message in Cmake log:

    
-- -- The highly recommended 'STLIB' plugin is missing. You can compile SoftRobots but most of the provided examples will not work.

    So as the message said I couldn’t open any example of this plugin

    Now I added STLIB as an external directory to fix the problem and added the plugin at the same time. But when I want to compile again with ninja
    it gets error: /usr/bin/ld: cannot find -lSofaComponentCommon
    So Please let me know your thoughts

    23 April 2020 at 19:36 #15935
    Hugo
    Keymaster

    Hi @amir

    With both STLIB and SoftRobot, what was the full output of CMake?
    What was the full error (before /usr/bin/ld: cannot find -lSofaComponentCommon)

    Hugo

    24 April 2020 at 10:01 #15940
    Amir
    Blocked

    Dear @Hugo
    I add these two addresses to external directory together
    /home/user/sofa/STLIB;/home/user/sofa/plugins
    and turning plugin_sofapython on

    this is the output of Cmake after configuration and generation:

    
Adding module SofaPreconditioner
Adding module SofaHaptics
Adding module SofaOpenglVisual
Adding plugin CImgPlugin
CImgPlugin: TIFF Image Format enabled
CImgPlugin: JPEG Image Format enabled
CImgPlugin: PNG Image Format enabled
Adding plugin SofaMiscCollision
SofaMiscModule: build all maintained sofa components.
SofaMiscCollision: optional dependency SofaSphFluid not found de-activing: <SpatialGridPointModel>
-- PSL is an experimental feature, use it at your own risk.
Adding application runSofa
Write Plugin list at /home/amir/sofa/build/lib/plugin_list.conf.default
Adding external directory: STLIB (/home/amir/sofa/STLIB)
Install prefix: /home/amir/sofa/build/install
Adding external directory: plugins (/home/amir/sofa/plugins)
Install prefix: /home/amir/sofa/build/install
-- Found dependency : 'STLIB' plugin .
Configuring done
Generating done

    it seems everything is ok in Cmake

    this is the output after compiling with ninja:

    
[13/13] Linking CXX executable bin/SoftRobots_test
FAILED: : && /usr/bin/g++  -Wall -W -O3 -DNDEBUG -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2  -rdynamic external_directories/plugins/tests/CMakeFiles/SoftRobots_test.dir/component/constraint/SurfacePressureConstraintTest.cpp.o external_directories/plugins/tests/CMakeFiles/SoftRobots_test.dir/component/constraint/UnilateralPlaneConstraintTest.cpp.o external_directories/plugins/tests/CMakeFiles/SoftRobots_test.dir/component/controller/AnimationEditorTest.cpp.o external_directories/plugins/tests/CMakeFiles/SoftRobots_test.dir/component/controller/DataVariationLimiterTest.cpp.o external_directories/plugins/tests/CMakeFiles/SoftRobots_test.dir/component/controller/SerialPortBridgeGenericTest.cpp.o external_directories/plugins/tests/CMakeFiles/SoftRobots_test.dir/component/engine/VolumeFromTrianglesTest.cpp.o external_directories/plugins/tests/CMakeFiles/SoftRobots_test.dir/component/engine/VolumeFromTetrahedronsTest.cpp.o  -o bin/SoftRobots_test  -Wl,-rpath,/home/amir/sofa/build/lib:/home/amir/Qt/5.14.2/gcc_64/lib  lib/libSofaTest.so.0.1  lib/libSofaGTestMain.a  lib/libSoftRobots.so.1.0  -lSofaComponentCommon  lib/libSceneCreator.so.0.1  lib/libSofaSimulationGraph.so.20.06.99  lib/libSofaPython.so.0.1  lib/libSofaGuiCommon.so.20.06.99  lib/libSofaComponentAll.so.1.0  lib/libSofaBase.so.20.06.99  lib/libSofaCommon.so.20.06.99  lib/libSofaEngine.so.20.06.99  lib/libSofaExplicitOdeSolver.so.20.06.99  lib/libSofaGeneral.so.20.06.99  lib/libSofaConstraint.so.20.06.99  lib/libSofaImplicitOdeSolver.so.20.06.99  lib/libSofaUserInteraction.so.20.06.99  lib/libSofaGeneralRigid.so.20.06.99  lib/libSofaGeneralVisual.so.20.06.99  lib/libSofaBaseVisual.so.20.06.99  lib/libSofaGraphComponent.so.20.06.99  lib/libSofaBaseUtils.so.20.06.99  lib/libSofaGeneralAnimationLoop.so.20.06.99  lib/libSofaGeneralDeformable.so.20.06.99  lib/libSofaGeneralExplicitOdeSolver.so.20.06.99  lib/libSofaGeneralImplicitOdeSolver.so.20.06.99  lib/libSofaGeneralLinearSolver.so.20.06.99  lib/libSofaGeneralObjectInteraction.so.20.06.99  lib/libSofaGeneralEngine.so.20.06.99  lib/libSofaValidation.so.20.06.99  lib/libSofaLoader.so.20.06.99  lib/libSofaGeneralLoader.so.20.06.99  /usr/lib/x86_64-linux-gnu/libz.so  lib/libSofaAdvanced.so.20.06.99  lib/libSofaMisc.so.20.06.99  lib/libSofaMiscExtra.so.20.06.99  lib/libSofaGeneralMeshCollision.so.20.06.99  lib/libSofaMeshCollision.so.20.06.99  lib/libSofaBaseCollision.so.20.06.99  lib/libSofaObjectInteraction.so.20.06.99  lib/libSofaTopologyMapping.so.20.06.99  lib/libSofaMiscEngine.so.20.06.99  lib/libSofaNonUniformFem.so.20.06.99  lib/libSofaGeneralSimpleFem.so.20.06.99  lib/libSofaDenseSolver.so.20.06.99  lib/libSofaMiscFem.so.20.06.99  lib/libnewmat.a  lib/libSofaMiscForceField.so.20.06.99  lib/libSofaDeformable.so.20.06.99  lib/libSofaBoundaryCondition.so.20.06.99  lib/libSofaEigen2Solver.so.20.06.99  lib/libSofaBaseLinearSolver.so.20.06.99  lib/libSofaGeneralTopology.so.20.06.99  lib/libSofaMiscSolver.so.20.06.99  lib/libSofaSimulationTree.so.20.06.99  lib/libSofaMiscTopology.so.20.06.99  /usr/lib/x86_64-linux-gnu/libz.so  -lpython2.7  lib/libSofaMiscMapping.so.20.06.99  lib/libSofaRigid.so.20.06.99  lib/libSofaBaseMechanics.so.20.06.99  lib/libSofaSimpleFem.so.20.06.99  lib/libSofaBaseTopology.so.20.06.99  lib/libSofaSimulationCommon.so.20.06.99  lib/libSofaSimulationCore.so.20.06.99  lib/libSofaCore.so.20.06.99  lib/libSofaDefaultType.so.20.06.99  lib/libSofaHelper.so.20.06.99  lib/libgtest.so.2.6.2  /usr/lib/x86_64-linux-gnu/libGLU.so  /usr/lib/x86_64-linux-gnu/libGL.so  /usr/lib/x86_64-linux-gnu/libGLEW.so  /usr/lib/x86_64-linux-gnu/libboost_filesystem.so  /usr/lib/x86_64-linux-gnu/libboost_program_options.so  /usr/lib/x86_64-linux-gnu/libboost_thread.so  /usr/lib/x86_64-linux-gnu/libboost_chrono.so  /usr/lib/x86_64-linux-gnu/libboost_system.so  /usr/lib/x86_64-linux-gnu/libboost_date_time.so  /usr/lib/x86_64-linux-gnu/libboost_atomic.so  -pthread  /home/amir/Qt/5.14.2/gcc_64/lib/libQt5Network.so.5.14.2  /home/amir/Qt/5.14.2/gcc_64/lib/libQt5Core.so.5.14.2  -Wl,-rpath-link,/home/amir/sofa/build/lib && :
/usr/bin/ld: cannot find -lSofaComponentCommon
collect2: error: ld returned 1 exit status
ninja: build stopped: subcommand failed.
    26 April 2020 at 11:41 #15947
    Hugo
    Keymaster

    Hi @amir

    I guess you are using both SOFA and SoftRobot (recent) source version, are you?
    If so, could you try to add at line 223 of the CMakeList.txt at the root of the SoftRobot plugin: SofaComponentCommon to the list of target_link_libraries ?

    Hugo

    26 April 2020 at 14:54 #15949
    Amir
    Blocked

    Dear @Hugo
    Thank you, As you told I added the SofaComponentCommon but after compile, the error is not solved:

    
 -- Build files have t written to: /home/amir/sofa/build
[13/15] Linking CXX shared library lib/libSoftRobots.so.1.0
FAILED: : && /usr/bin/g++ -fPIC -Wall -W -O3 -DNDEBUG -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2  -Wl,--no-undefined -lc -shared -Wl,-soname,libSoftRobots.so.1.0 -o lib/libSoftRobots.so.1.0 external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/initSoftRobots.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/behavior/SoftRobotsBaseConstraint.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/behavior/SoftRobotsConstraint.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/constraint/CableConstraint.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/constraint/PartialRigidificationConstraint.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/constraint/SurfacePressureConstraint.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/constraint/UnilateralPlaneConstraint.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/constraint/model/CableModel.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/constraint/model/SurfacePressureModel.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/controller/AnimationEditor.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/controller/DataVariationLimiter.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/controller/InteractiveControl.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/controller/modules/Network.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/controller/modules/SplitFloat.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/controller/modules/Serial.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/controller/SerialPortBridgeGeneric.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/engine/CenterOfMass.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/engine/VolumeFromTriangles.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/engine/VolumeFromTetrahedrons.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/forcefield/PREquivalentStiffnessForceField.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/forcefield/PartialRigidificationForceField.cpp.o external_directories/plugins/CMakeFiles/SoftRobots.dir/src/SoftRobots/component/forcefield/PipeForceField.cpp.o  -Wl,-rpath,/home/amir/Qt/5.14.2/gcc_64/lib:/home/amir/sofa/build/lib:  -lSofaComponentCommon  /home/amir/Qt/5.14.2/gcc_64/lib/libQt5Network.so.5.14.2  lib/libSofaPython.so.0.1  /home/amir/Qt/5.14.2/gcc_64/lib/libQt5Core.so.5.14.2  lib/libSofaGuiCommon.so.20.06.99  lib/libSofaComponentAll.so.1.0  lib/libSofaBase.so.20.06.99  lib/libSofaCommon.so.20.06.99  lib/libSofaEngine.so.20.06.99  lib/libSofaExplicitOdeSolver.so.20.06.99  lib/libSofaAdvanced.so.20.06.99  lib/libSofaMisc.so.20.06.99  lib/libSofaMiscMapping.so.20.06.99  lib/libSofaMiscExtra.so.20.06.99  lib/libSofaMiscEngine.so.20.06.99  lib/libSofaNonUniformFem.so.20.06.99  lib/libSofaMiscFem.so.20.06.99  lib/libSofaMiscForceField.so.20.06.99  lib/libSofaMiscSolver.so.20.06.99  lib/libSofaMiscTopology.so.20.06.99  /usr/lib/x86_64-linux-gnu/libz.so  lib/libSofaGeneral.so.20.06.99  lib/libSofaConstraint.so.20.06.99  lib/libSofaImplicitOdeSolver.so.20.06.99  lib/libSofaUserInteraction.so.20.06.99  lib/libSofaGeneralRigid.so.20.06.99  lib/libSofaGeneralVisual.so.20.06.99  lib/libSofaBaseVisual.so.20.06.99  lib/libSofaTopologyMapping.so.20.06.99  lib/libSofaBoundaryCondition.so.20.06.99  lib/libSofaEigen2Solver.so.20.06.99  lib/libSofaGraphComponent.so.20.06.99  lib/libSofaBaseUtils.so.20.06.99  lib/libSofaGeneralTopology.so.20.06.99  lib/libSofaGeneralAnimationLoop.so.20.06.99  lib/libSofaGeneralDeformable.so.20.06.99  lib/libSofaGeneralExplicitOdeSolver.so.20.06.99  lib/libSofaGeneralImplicitOdeSolver.so.20.06.99  lib/libSofaGeneralLinearSolver.so.20.06.99  lib/libSofaGeneralObjectInteraction.so.20.06.99  lib/libSofaGeneralSimpleFem.so.20.06.99  lib/libSofaSimpleFem.so.20.06.99  lib/libSofaGeneralEngine.so.20.06.99  lib/libSofaGeneralMeshCollision.so.20.06.99  lib/libSofaValidation.so.20.06.99  lib/libSofaMeshCollision.so.20.06.99  lib/libSofaRigid.so.20.06.99  lib/libSofaBaseMechanics.so.20.06.99  lib/libSofaObjectInteraction.so.20.06.99  lib/libSofaDeformable.so.20.06.99  lib/libSofaBaseTopology.so.20.06.99  lib/libSofaBaseCollision.so.20.06.99  lib/libSofaGeneralLoader.so.20.06.99  /usr/lib/x86_64-linux-gnu/libz.so  lib/libSofaLoader.so.20.06.99  lib/libSofaSimulationTree.so.20.06.99  lib/libSofaDenseSolver.so.20.06.99  lib/libSofaBaseLinearSolver.so.20.06.99  lib/libSofaSimulationCommon.so.20.06.99  lib/libSofaSimulationCore.so.20.06.99  lib/libSofaCore.so.20.06.99  lib/libSofaDefaultType.so.20.06.99  lib/libSofaHelper.so.20.06.99  /usr/lib/x86_64-linux-gnu/libGLU.so  /usr/lib/x86_64-linux-gnu/libGL.so  /usr/lib/x86_64-linux-gnu/libGLEW.so  /usr/lib/x86_64-linux-gnu/libboost_filesystem.so  /usr/lib/x86_64-linux-gnu/libboost_program_options.so  /usr/lib/x86_64-linux-gnu/libboost_thread.so  /usr/lib/x86_64-linux-gnu/libboost_chrono.so  /usr/lib/x86_64-linux-gnu/libboost_system.so  /usr/lib/x86_64-linux-gnu/libboost_date_time.so  /usr/lib/x86_64-linux-gnu/libboost_atomic.so  lib/libgtest.so.2.6.2  -pthread  lib/libnewmat.a  -lpython2.7  -Wl,-rpath-link,/home/amir/sofa/build/lib && :
/usr/bin/ld: cannot find -lSofaComponentCommon
collect2: error: ld returned 1 exit status
ninja: build stopped: subcommand failed.
    26 April 2020 at 15:17 #15950
    Hugo
    Keymaster

    Sorry @amir

    I replied without carefully checking.
    A recent pull-request (#1314) removed what is called collections in SOFA, it had some impacts on the Cmake configurations. See here for SofaComponentCommon.

    Could you just delete your CMakeCache, reconfigure SOFA (+SoftRobot) and recompile both.

    Hugo

    26 April 2020 at 19:52 #15951
    Amir
    Blocked

    Dear @Hugo
    I didn’t get it what you mean? removing SofaComponentCommon from Cmakelist and delete Cmake cache and recompile and rebuild again? if that is what you mean I did it again and the error is the same.I always recompile SOFA+Softrobot together

    Many thanks for your support
    Amir

    26 April 2020 at 21:09 #15952
    jnbrunet
    Moderator

    Hi @amir,

    It seems to be the tests of SofaRobots that are failing to link.

    Edit the file SoftRobots/tests/CMakeLists.txt, at line 26 you will find something like:

    target_link_libraries(${PROJECT_NAME} SofaTest SofaGTestMain SoftRobots SofaCore SofaConstraint SofaBaseMechanics SofaUserInteraction SofaComponentCommon)

    Remove that SofaComponentCommon from there and replace it with SofaCommon.

    If it solves your problem, don’t hesitate to create an issue on the github of SofaRobots

    J-N

    28 April 2020 at 11:11 #15967
    Amir
    Blocked

    Dear @jnbrunet

    Thanks for your advice. it works and the problem is solved.
    Best Regards
    AMir

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