[Star war]

I have solved the problem of the Debug mode in Terminal by setting the suffix to empty in CMakeList.txt. However, in Xcode’s case, that doesn’t work and I am still struggling to solve it.

[Star war]

Hi @faichele,
Thank you for your answer. It is insightful that these errors originate from the debug suffix(“_d”).
With best regards,
Enxing.

[Star war]

CGAL4.7 it is too old. I think you should try to upgrade toward the latest version 5.0

[Star war]

Previously, I didn’t obey

We recommend to install Qt in your user directory with the unified installer

and installed qt by brew install qt. But just now I install the unified installer of QT and select the three components Macos, Charts, and WebEngine of QT with the latest version. After I uninstall old QT by brew uninstall qt, I succeed to build SOFA.

Thank you.
Enxing.

[Star war]

Do you install CGAL package CGAL? if not, I think you should try to download and install it.

[Star war]

Oh, it builds successfully in C++14.

[Star war]

Hi, @Hugo @MatFit

I tried this plugin in Macos. And I get some errors when run “make” command.
here is the output:

make:

Scanning dependencies of target SkeletonPlugin
[ 33%] Building CXX object CMakeFiles/SkeletonPlugin.dir/initSkeletonPlugin.cpp.o
[ 66%] Building CXX object CMakeFiles/SkeletonPlugin.dir/MeshSkeletonization.cpp.o
In file included from /Users/steven/Code/sofa/sofa/v19.06/SofaSkeletonPlugin/SkeletonPlugin/MeshSkeletonization.cpp:31:
In file included from /Users/steven/Code/sofa/sofa/v19.06/SofaSkeletonPlugin/SkeletonPlugin/MeshSkeletonization.inl:31:
In file included from /Users/steven/Code/sofa/sofa/v19.06/SofaSkeletonPlugin/SkeletonPlugin/MeshSkeletonization.h:32:
In file included from /Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/defaulttype/Vec.h:27:
In file included from /Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/defaulttype/DataTypeInfo.h:27:
In file included from /Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/vector.h:37:
In file included from /Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/logging/Messaging.h:81:
In file included from /Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/logging/MessageDispatcher.h:30:
In file included from /Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/logging/Message.h:38:
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/logging/FileInfo.h:57:17: error: function
      definition does not declare parameters
    const char *filename {nullptr};
                ^
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/logging/FileInfo.h:58:9: error: function
      definition does not declare parameters
    int line             {0};
        ^
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/logging/FileInfo.h:59:37: error: member
      initializer 'filename' does not name a non-static data member or base class
    FileInfo(const char *f, int l): filename(f), line(l) {}
                                    ^~~~~~~~~~~
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/logging/FileInfo.h:59:50: error: member
      initializer 'line' does not name a non-static data member or base class
    FileInfo(const char *f, int l): filename(f), line(l) {}
                                                 ^~~~~~~
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/logging/FileInfo.h:62:17: error: member
      initializer 'filename' does not name a non-static data member or base class
    FileInfo(): filename(s_unknownFile), line(0) {}
                ^~~~~~~~~~~~~~~~~~~~~~~
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/logging/FileInfo.h:62:42: error: member
      initializer 'line' does not name a non-static data member or base class
    FileInfo(): filename(s_unknownFile), line(0) {}
                                         ^~~~~~~
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/logging/FileInfo.h:71:9: error: use of
      undeclared identifier 'filename'
        filename = tmp ;
        ^
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/logging/FileInfo.h:72:9: error: use of
      undeclared identifier 'line'
        line = l ;
        ^
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/logging/FileInfo.h:78:9: error: use of
      undeclared identifier 'filename'
        filename = tmp ;
        ^
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/logging/FileInfo.h:79:9: error: use of
      undeclared identifier 'line'
        line = l ;
        ^
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/logging/FileInfo.h:83:12: error: use of
      undeclared identifier 'filename'
        if(filename)
           ^
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/logging/FileInfo.h:84:20: error: use of
      undeclared identifier 'filename'
            delete filename ;
                   ^
In file included from /Users/steven/Code/sofa/sofa/v19.06/SofaSkeletonPlugin/SkeletonPlugin/MeshSkeletonization.cpp:31:
In file included from /Users/steven/Code/sofa/sofa/v19.06/SofaSkeletonPlugin/SkeletonPlugin/MeshSkeletonization.inl:31:
In file included from /Users/steven/Code/sofa/sofa/v19.06/SofaSkeletonPlugin/SkeletonPlugin/MeshSkeletonization.h:32:
In file included from /Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/defaulttype/Vec.h:27:
In file included from /Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/defaulttype/DataTypeInfo.h:27:
In file included from /Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/vector.h:37:
In file included from /Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/logging/Messaging.h:81:
In file included from /Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/logging/MessageDispatcher.h:32:
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/system/SofaOStream.h:136:29: error: function
      definition does not declare parameters
    logging::FileInfo::SPtr m_fileInfo {helper::logging::EmptyFileInfo};
                            ^
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/system/SofaOStream.h:117:62: error: use of
      undeclared identifier 'm_fileInfo'; did you mean 'fileInfo'?
    const logging::FileInfo::SPtr& fileInfo() const { return m_fileInfo; }
                                                             ^
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/system/SofaOStream.h:117:36: note: 'fileInfo'
      declared here
    const logging::FileInfo::SPtr& fileInfo() const { return m_fileInfo; }
                                   ^
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/system/SofaOStream.h:125:9: error: use of
      undeclared identifier 'm_fileInfo'
        m_fileInfo = helper::logging::EmptyFileInfo;
        ^
In file included from /Users/steven/Code/sofa/sofa/v19.06/SofaSkeletonPlugin/SkeletonPlugin/MeshSkeletonization.cpp:31:
In file included from /Users/steven/Code/sofa/sofa/v19.06/SofaSkeletonPlugin/SkeletonPlugin/MeshSkeletonization.inl:31:
In file included from /Users/steven/Code/sofa/sofa/v19.06/SofaSkeletonPlugin/SkeletonPlugin/MeshSkeletonization.h:32:
In file included from /Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/defaulttype/Vec.h:27:
In file included from /Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/defaulttype/DataTypeInfo.h:27:
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/helper/vector.h:100:23: error: no template named
      'initializer_list' in namespace 'std'
    vector(const std::initializer_list<T>& t) : std::vector<T,Alloc>(t) {}
                 ~~~~~^
In file included from /Users/steven/Code/sofa/sofa/v19.06/SofaSkeletonPlugin/SkeletonPlugin/MeshSkeletonization.cpp:31:
In file included from /Users/steven/Code/sofa/sofa/v19.06/SofaSkeletonPlugin/SkeletonPlugin/MeshSkeletonization.inl:31:
In file included from /Users/steven/Code/sofa/sofa/v19.06/SofaSkeletonPlugin/SkeletonPlugin/MeshSkeletonization.h:32:
In file included from /Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/defaulttype/Vec.h:27:
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/defaulttype/DataTypeInfo.h:1295:1: error: expected
      expression
{
^
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/defaulttype/DataTypeInfo.h:1297:2: error: expected a
      type
};
 ^
/Applications/runSofa.app/Contents/MacOS/include/SofaFramework/sofa/defaulttype/DataTypeInfo.h:1297:2: error: expected
      '{' after base class list
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make[2]: *** [CMakeFiles/SkeletonPlugin.dir/MeshSkeletonization.cpp.o] Error 1
make[1]: *** [CMakeFiles/SkeletonPlugin.dir/all] Error 2
make: *** [all] Error 2

I succeed in running ‘cmake’, but I get a lot of errors when running ‘make’ to generate the Library. I use the latest version of Sofa 19.12 and also try to use the old version of Sofa 19.06, but when I build it by “make install or make”, I get the same errors above.

I hope to receive the instruction according to these logs. Thank you!

[Star war]

In the console of runsofa, I got
[PluginManager] Plugin loading failed (E:/Tools/sofa19.06-exe/plugins/SkeletonPlugin/bin/SkeletonPlugin.dll): ~

[Star war]

Hi,

I have built the SkeletonPlugin successfully with Win10 and VS2017, and put them into the plugin file. I also add the plugin name and version in plugin_list.conf.default. But it failed to load this plugin in the runsofa frame. Did I miss some crucial steps?

Thank you!

[Star war]

Hi Hugo and MFit,

Thank you for your reply.

I have read the reference. It helps a lot.

I do have the similar problem with MFit, which is building a vascular tree with beamFEM. And I am really interested in the info you mentioned about extracting centerlines and creating mechanical model. Could you gather more about it? Thank you.

Best,
Enxing

[Author]

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